BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012H09SP1|AL426438
(618 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 893 0.0
>3x_Contig1788
Length = 28493
Score = 893 bits (437), Expect = 0.0
Identities = 564/618 (91%), Gaps = 5/618 (0%)
Strand = Plus / Minus
Query: 1 cawgctcatactaaacctgcctacggtctctgtctgtctgtctcttcggtctttttctcc 60
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1915 catgctcattctaaacctgcctacggtctctgtctgtctgtctcttcggtctttttctcc 1856
Query: 61 ttamwccwwaagaatttctcctattggaatattgtgggaaagaaaagattcacacaattc 120
||| || |||||||||||| ||||||| |||||||||||||||| |||||||| |||
Sbjct: 1855 ttactcctttagaatttctcct-ttggaat-ttgtgggaaagaaaag-ttcacacatttc 1799
Query: 121 aggtatgtgaaawtaaagggtgaaaaakaagcwctcactctttttgagagtttatataaw 180
||||||||| | |||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 1798 aggtatgtgtatttaaaggttgaaaaatt-gctctcactctttttgagagtttatataat 1740
Query: 181 arctgccaatttawatatttagctcgtgagttcttctgtaaccawtcgagtactagcccc 240
| |||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1739 aactgccattttatttatttagctcgtgagttcttctgtaaccattcgagtactagcccc 1680
Query: 241 ctttcaattgatccgttaaatgttttagtgagctaatttawcgaagaaagcacamagwwa 300
||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||| || |
Sbjct: 1679 cttacaattgatccgttaattgttttagagagctaatttatcgaagaaagcacacagtta 1620
Query: 301 aaawcaaattamacagwacaaaatggttaatgcagttgcagttttgaagggtgattcctc 360
|| ||||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 1619 taatcaaattacacagtacaaaatggttaatgcagtagcagttttgaagggtgatacctc 1560
Query: 361 tgtttcaggtatwgttagattcgaacaagaatcagaagatcaacaaaccaagatttcttg 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1559 tgtttcaggtattgttagattcgaacaagaatcagaagatcaacaaaccaagatttcttg 1500
Query: 421 ggaaatcactggaaaagamgmcaaagctttgagaggwtaccanatccaaacttwtggtga 480
|||||||||||| || || | ||| ||||||||||| | ||| ||||| |||| ||||||
Sbjct: 1499 ggaaatcactggtaatgacgccaatgctttgagaggtttccatatccatacttttggtga 1440
Query: 481 caacaccaatggttgcacctcagctggwtccacatttcaacccattcaamaagaamcacg 540
||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 1439 caacaccaatggttgcacctctgctgg-tccacatttcaacccattcaacaagaaccacg 1381
Query: 541 gtgctccagaagatgaagaaagacacgtcggtgacttgggtaacattccaactgatgctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 gtgctccagaagatgaagaaagacacgtcggtgacttgggtaacattccaactgatgctc 1321
Query: 601 aargtatttctaagggta 618
|| |||||||||||||||
Sbjct: 1320 aaggtatttctaagggta 1303
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.717 1.34
Gapped
Lambda K H
1.42 0.717 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3715
Number of Sequences: 1807
Number of extensions: 3715
Number of successful extensions: 107
Number of sequences better than 1.0e-20: 1
length of query: 618
length of database: 10,358,551
effective HSP length: 16
effective length of query: 602
effective length of database: 10,329,639
effective search space: 6218442678
effective search space used: 6218442678
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.6 bits)
S1: 11 (23.0 bits)
S2: 49 (100.6 bits)